PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g065900.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 289aa MW: 32854.9 Da PI: 7.134

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g065900.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.9	1.9e-16	36	110	17	82
trihelix 17 meerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +eer+ +++ + +++W++vs++++ +g++r+p+qC+ +w+nl +++kkike+e++ ++e++s + Solyc01g065900.1.1 36 VEERIHQARtrgmelgstQVEAKWDSVSSYCKIQGVNRGPIQCQRRWSNLFGYFKKIKEWESQIKEEKESFWMIR 110 555555432333344444999******************************************999998877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.4E-8	38	105	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MASESNNLKQ LSLTPSTDFD IRNQSINGLN DGKKVVEERI HQARTRGMEL GSTQVEAKWD 60 SVSSYCKIQG VNRGPIQCQR RWSNLFGYFK KIKEWESQIK EEKESFWMIR NNFKREKKLL 120 GFFDRQVFDI LDHGNDNEEG LDLTSVSEVL SDSGRSVFVE DDGLFSDVPQ KNEDAIPMET 180 SEELYQPLSL VSPTQAGIRQ TTTRGDDKGR GLEGSKGKRN DSNDEKARNV QHHLVKALQK 240 NGKMVSSPLK AQIMHSEWDR EQRKDHVDKL VVVLNKLACA LEKIADKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g065900.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC246636	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-44h3 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004229328.1	0.0	trihelix transcription factor ASR3-like
TrEMBL	A0A3Q7EYY2	0.0	A0A3Q7EYY2_SOLLC; Uncharacterized protein
STRING	Solyc01g065900.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1786	24	60
Representative plant	OGRP1747	13	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-65	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Solyc01g065900.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]