PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g065890.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Trihelix | ||||||||
Protein Properties | Length: 120aa MW: 14270.6 Da PI: 8.3175 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 45.3 | 2.3e-14 | 29 | 88 | 24 | 83 |
trihelix 24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 + +++W++vs++++ + ++r+p+qC+ +w+nl +++ kike+e++ ++e++s + + + Solyc01g065890.1.1 29 VNDVEAKWDSVSSYCKIQWVNRGPIQCQRRWSNLFGDFMKIKEWESQIKEEKESFWMMCN 88 456689******************************************999998887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.6E-7 | 16 | 87 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MASESNNLKQ LILILYTDFD IRNQSINGVN DVEAKWDSVS SYCKIQWVNR GPIQCQRRWS 60 NLFGDFMKIK EWESQIKEEK ESFWMMCNNF KREKNLSGFI IEKCLIFLIM EMAIKKVWT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g065890.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246636 | 1e-149 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-44h3 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015167214.1 | 6e-44 | PREDICTED: trihelix transcription factor ASR3-like | ||||
Swissprot | Q8VZ20 | 5e-30 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | A0A3Q7EFI5 | 1e-76 | A0A3Q7EFI5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g065890.1.1 | 2e-81 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA26347 | 2 | 2 | Representative plant | OGRP1747 | 13 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 2e-32 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g065890.1.1 |
Publications ? help Back to Top | |||
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