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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc01g065540.2.1 |
Common Name | LOC101267446 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
ARR-B |
Protein Properties |
Length: 678aa MW: 74817.6 Da PI: 6.5155 |
Description |
ARR-B family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc01g065540.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | G2-like | 91.7 | 6.1e-29 | 211 | 264 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
Solyc01g065540.2.1 211 KPRVVWSVELHQQFVQAVHQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 264
79*******************.********************************8 PP
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2 | Response_reg | 82.3 | 1.6e-27 | 31 | 139 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89
vl+vdD+p+ +++l+++l++ +y ev+ + +e al l+e++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a ++++ + +
Solyc01g065540.2.1 31 VLVVDDDPTCLKILEKMLKNCHY-EVTKCNRAEVALSHLRENKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDSKDVVMKG 119
89*********************.***************999999**********************6654.8****************** PP
HHTTESEEEESS--HHHHHH CS
Response_reg 90 lkaGakdflsKpfdpeelvk 109
+ Ga d+l Kp+ +e+l +
Solyc01g065540.2.1 120 VTHGAYDYLIKPVRIEALKN 139
****************9986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009873 | Biological Process | ethylene-activated signaling pathway |
GO:0010082 | Biological Process | regulation of root meristem growth |
GO:0010119 | Biological Process | regulation of stomatal movement |
GO:0010150 | Biological Process | leaf senescence |
GO:0071368 | Biological Process | cellular response to cytokinin stimulus |
GO:0080113 | Biological Process | regulation of seed growth |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 678 aa
Download sequence Send
to blast |
MNIGSGSVLS STGSWKSGDV VPDQFPVGLR VLVVDDDPTC LKILEKMLKN CHYEVTKCNR 60 AEVALSHLRE NKNGFDIVIS DVHMPDMDGF KLLEHIGLEM DLPVIMMSAD DSKDVVMKGV 120 THGAYDYLIK PVRIEALKNI WQHVVRKKKH EWRDNNFDQS GSVEEGDRQQ KQSEDVDYSS 180 SANEGNWKNS KKRKEEDDEG EERDDTSSLK KPRVVWSVEL HQQFVQAVHQ LGIDKAVPKK 240 ILELMNVPGL TRENVASHLQ KYRLYLRRLS GVSQHQNGLN NSFMGRPDAT FGTISSLNGL 300 DLQAIAAAGQ IPAQSLATLQ AAALGRSASK SAISMPLVDQ RNLFSFENSQ VRFPEGQQQL 360 NNSNKQIDLL HGIPTTMEPK QLANLHHPSQ SFMGMNMQVN NSMAQHNNSV IMRMSQSQPR 420 AQMLSGANNG SQISRLPFSR QQSLSSEGIP GVVLAQSRTV DNARASVYNP VSQASSMVDF 480 SVNQSKDLQN YNFSLGSNSA GMSTLTNRGM LQEEVNSDIK GSRGFPSNYD IFNDLHQQPK 540 PQNWGLQNVG SSFDSSHHPS IQGSQGVPSQ LLMQQGISST HNNGQNRNGP IGKPMYTNGE 600 ESGHTNLMGG PQLNSVSRNT LAVKAERFLD ADYQSTNFPE QFGQDDLMSA FLKQQGSVGP 660 VETEFGFDGY TLDNLPV*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Publications
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- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Takahashi N, et al.
Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots. Curr. Biol., 2013. 23(18): p. 1812-7 [PMID:24035544] - Ge XM, et al.
Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis. Plant J., 2015. 82(1): p. 138-50 [PMID:25704455] - Takahashi N,Umeda M
Cytokinins promote onset of endoreplication by controlling cell cycle machinery. Plant Signal Behav, 2014. 9(8): p. e29396 [PMID:25763620] - Kobayashi K, et al.
Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling. Plant Physiol., 2017. 173(4): p. 2340-2355 [PMID:28193764] - Arnaud D, et al.
Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis. Plant Cell, 2017. 29(3): p. 543-559 [PMID:28254779] - Zhang TQ, et al.
A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration. Plant Cell, 2017. 29(5): p. 1073-1087 [PMID:28389585] - Meng WJ, et al.
Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL. Plant Cell, 2017. 29(6): p. 1357-1372 [PMID:28576846] - Zhang F,May A,Irish VF
Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL. Trends Plant Sci., 2017. 22(10): p. 815-817 [PMID:28886911] - Takatsuka H,Higaki T,Umeda M
Actin Reorganization Triggers Rapid Cell Elongation in Roots. Plant Physiol., 2018. 178(3): p. 1130-1141 [PMID:30185441]
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