PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g060420.2.1
Common NameLOC104646937
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 155aa    MW: 17711.1 Da    PI: 10.368
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g060420.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000384466123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C++ F ++  L  H++ H
  Solyc01g060420.2.1 44 FECQFCHREFANSQALGGHQNAH 66
                        89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.64E-74071No hitNo description
Gene3DG3DSA:3.30.160.601.9E-54070IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5524471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MGESSVQTNF SSSSPRQVKL FGFQVTECDQ TTPPPLVPSE DKRFECQFCH REFANSQALG  60
GHQNAHKKER QRTRRAKFIG YQQRFRPVVP LINAHAVRTG ALINNNVRYY RSQILSGVPL  120
RYQIHLRQQQ HMMAVQNQDV DGTEVDLHLR LAPP*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots, mature stem and lateral branches. Expressed at low levels in rosette leaves and siliques. {ECO:0000269|PubMed:23506479}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Acts upstream of GIS, GIS2, ZFP8, ZFP5 and the trichome initiation regulators GL1 and GL3 (PubMed:23506479). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:23506479, ECO:0000269|PubMed:24808098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g060420.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinin and gibberellin. {ECO:0000269|PubMed:23506479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010319743.11e-112zinc finger protein 6-like
SwissprotQ392653e-15ZFP6_ARATH; Zinc finger protein 6
TrEMBLA0A3Q7EFB51e-111A0A3Q7EFB5_SOLLC; Uncharacterized protein
STRINGSolyc01g060420.2.11e-112(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105631724
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.15e-14C2H2 family protein
Publications ? help Back to Top
  1. Giavalisco P, et al.
    High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome.
    Plant Mol. Biol., 2005. 57(4): p. 577-91
    [PMID:15821981]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Sun L, et al.
    GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis.
    New Phytol., 2015. 206(1): p. 220-30
    [PMID:25640859]
  5. Yu D, et al.
    RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
    Plant Physiol. Biochem., 2015. 88: p. 82-8
    [PMID:25676129]