|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Solyc01g060300.1.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
Family |
M-type_MADS |
Protein Properties |
Length: 212aa MW: 23122.6 Da PI: 9.3583 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc01g060300.1.1 | genome | ITAG | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 71.8 | 6.1e-23 | 14 | 59 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
+i+n++n qvt+skRr+g++KKA+ELS+LC+a+va++ fs+++k+y
Solyc01g060300.1.1 14 KIQNQTNLQVTLSKRRAGLFKKASELSTLCGANVAIVAFSPSNKVY 59
79******************************************98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 212 aa
Download sequence Send
to blast |
MRKPNGRKKI EIAKIQNQTN LQVTLSKRRA GLFKKASELS TLCGANVAIV AFSPSNKVYA 60 CGHPSVESIV DKFIGENPPP ETDDPNPIIV MTADTIPKGS PFTSMQEFSL GIDFGKLCQI 120 TCVPQLIESC PNSSILQIWT DYHLGSTNEL AHQALLDLGG YRLVILPLHR AGTVRCSVKP 180 ASRSPFHFRN PSAHSFDWIA RPNSMLGQGR P*
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3kov_A | 1e-16 | 6 | 89 | 1 | 84 | Myocyte-specific enhancer factor 2A |
3kov_B | 1e-16 | 6 | 89 | 1 | 84 | Myocyte-specific enhancer factor 2A |
3kov_I | 1e-16 | 6 | 89 | 1 | 84 | Myocyte-specific enhancer factor 2A |
3kov_J | 1e-16 | 6 | 89 | 1 | 84 | Myocyte-specific enhancer factor 2A |
3p57_A | 1e-16 | 6 | 89 | 1 | 84 | Myocyte-specific enhancer factor 2A |
3p57_B | 1e-16 | 6 | 89 | 1 | 84 | Myocyte-specific enhancer factor 2A |
3p57_C | 1e-16 | 6 | 89 | 1 | 84 | Myocyte-specific enhancer factor 2A |
3p57_D | 1e-16 | 6 | 89 | 1 | 84 | Myocyte-specific enhancer factor 2A |
3p57_I | 1e-16 | 6 | 89 | 1 | 84 | Myocyte-specific enhancer factor 2A |
3p57_J | 1e-16 | 6 | 89 | 1 | 84 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC240193 | 1e-134 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-152e17 map 1, complete sequence |