PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g057300.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 308aa    MW: 34544.4 Da    PI: 8.0085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g057300.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-10101148455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+  Er RR+++ + f++L +l+P++     +K + ++i+ +Av++I +Lq
  Solyc01g057300.1.1 101 IHKWTERERRKKMLTLFDTLHDLVPNL----PTKADQSTIVGEAVNHILELQ 148
                         58889*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-1394165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.15E-1095149No hitNo description
PROSITE profilePS5088813.46597147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-8101148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-11101160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.002105153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MKKKKMNEGG GNDHDADVWS YLDLNDYQVG SGEKFEGDKV LDLTRSDACQ PLTIVNEMFE  60
VNIYAAKNRS PPNREKNGKG IAEPKSGVDR GGGKRESKHK IHKWTERERR KKMLTLFDTL  120
HDLVPNLPTK ADQSTIVGEA VNHILELQNI FTKLKSQKLE RLEEYNIRLM SSQKVDNSWE  180
KYVGDQVSTN NSTVITPTTH GPSPLIPTGF MTWSSPNVIL NVCGEDAHIS VCFPKNPKLF  240
AIICYVLEKH KIDILSAQVS SDQFRSMFMI QAHAKGGSEL ALFSEVFTVE DMFKQAAIEI  300
RALTTSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g057300.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2461330.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-15m4 map 1, complete sequence
GenBankAC2465740.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-23o7 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229120.20.0transcription factor bHLH95-like
TrEMBLA0A3Q7EXJ90.0A0A3Q7EXJ9_SOLLC; Uncharacterized protein
STRINGSolyc01g057300.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-40bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]