PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g057080.1.1
Common NameLOC101257505
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 114aa    MW: 12352 Da    PI: 9.7698
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g057080.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-16655255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +y+G+r +k +g+Wv+eIr+p   g +  r +lg++ ++e Aa a++ a  +l+ 
  Solyc01g057080.1.1  6 KYRGIRKRK-WGKWVSEIRVP---G-SsERLWLGTYTSPEAAAVAHDIAYYCLRP 55
                        8*****999.**********8...4.34************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.34E-23567No hitNo description
SMARTSM003803.4E-23673IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-24667IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-16667IPR016177DNA-binding domain
PfamPF008474.0E-8653IPR001471AP2/ERF domain
PROSITE profilePS5103220.692667IPR001471AP2/ERF domain
PRINTSPR003676.1E-9718IPR001471AP2/ERF domain
PRINTSPR003676.1E-92945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MSSGAKYRGI RKRKWGKWVS EIRVPGSSER LWLGTYTSPE AAAVAHDIAY YCLRPESSSS  60
LHKLNFPSML PPNVQPGMSP TSVQKVASDA AMAIDAQFLT TPTPAQQHAD NYG*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g057080.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229130.13e-80ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I83e-38ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A3Q7EXE67e-79A0A3Q7EXE6_SOLLC; Uncharacterized protein
STRINGSolyc01g057080.1.11e-79(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94942028
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-40ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]