PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Protein Properties

Length: 285aa MW: 32630.3 Da PI: 5.818

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g015210.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.2	2.6e-12	11	100	1	98
EEEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+ +sd l + + lv+ k+++ ++++++ + le+++g+sWev++ ++++++++kGWk+F+ + ++ ++F+++ s Solyc01g015210.1.1 11 FIKIICSSDELCHlrNPLVFAKSHC-KNMLSP-----VFLESPHGKSWEVEV--IMSQDEIWIAKGWKSFCPYYSISVKSLLMFTYIPCSH 93 6777777777766555667777777.444443.....*************..889999***********************985455 PP E..EEEEE- CS B3 90 felvvkvfr 98 f v++++ Solyc01g015210.1.1 94 F--DVTIYD 100 5..777766 PP
2	B3	32	2.2e-10	197	264	16	87
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +++p ++ + ++ + ++l +e+g++W+v + + g++++++GW+ F k+n++ g++ Fkl++ Solyc01g015210.1.1 197 MTIPLRYSQGTYII--NMANMRLVSEEGEEWRVDI--GYNAGKVIIKGGWSAFQKDNKISNGETWRFKLIRG 264 56666665444223..23469************..999999***********************9974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.92E-18	4	102	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.8E-17	4	102	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.36E-11	9	100	No hit	No description
SMART	SM01019	5.9E-6	11	102	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.9E-9	21	97	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.784	42	102	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	9.42E-12	179	272	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.6E-12	181	271	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.053	182	276	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0026	185	276	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.0E-8	196	263	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MVNSSSNYPN FIKIICSSDE LCHLRNPLVF AKSHCKNMLS PVFLESPHGK SWEVEVIMSQ 60 DEIWIAKGWK SFCPYYSISV KSLLMFTYIP CSHFDVTIYD QSTSIIEYPI HQDIEVDEEE 120 DVIPFFQYNA IAIEEDIPVY LQANANVIEQ DKEVGEANSR SEQVNPKIYR SLHNLLNING 180 DKLHFEMVIK KAHSTYMTIP LRYSQGTYII NMANMRLVSE EGEEWRVDIG YNAGKVIIKG 240 GWSAFQKDNK ISNGETWRFK LIRGPIANVL QVHKNPTLLL IATN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g015210.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC245952	1e-144	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-43h23 map 1, complete sequence
GenBank	AC246694	1e-144	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-56k12 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019067668.1	0.0	B3 domain-containing protein REM5-like
TrEMBL	K4AUF5	0.0	K4AUF5_SOLLC; Uncharacterized protein
STRING	Solyc01g015210.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7499	5	24
Representative plant	OGRP1718	5	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49475.1	4e-10	B3 family protein

Link Out ? help Back to Top
Phytozome	Solyc01g015210.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]