 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Solyc01g014720.1.1 |
| Common Name | LOC101260466 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
ERF |
| Protein Properties |
Length: 175aa MW: 19845.5 Da PI: 10.1563 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc01g014720.1.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 59.1 | 1.1e-18 | 104 | 154 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
++y+GVr++k +g+WvAeIrd ++ +kr +lg+f ta+eAa a+++a+ +++g
Solyc01g014720.1.1 104 KKYRGVRQRK-WGSWVAEIRDIRI---NKRRWLGSFATAYEAALAYDKAAIEIKG 154
59*******9.**********544...4***********************9988 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 175 aa
Download sequence Send
to blast |
MASKDELHEN EVVKNQSKDA RGNKTNLMGD CSVVLQRVVR IYITDNDATD SSSDEEENHQ 60
GENSKRQKRI CKEIIIKNGK TNVTSKMVSS KEKNVTKTHQ ENVKKYRGVR QRKWGSWVAE 120
IRDIRINKRR WLGSFATAYE AALAYDKAAI EIKGPNALTN ILKPPPKEID PINH*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC245829 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-4l7 map 1, complete sequence |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Zwack PJ,Compton MA,Adams CI,Rashotte AM
Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
Plant Cell Rep., 2016. 35(3): p. 573-84
[PMID:26650835] - Raines T, et al.
The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
Plant J., 2016. 85(1): p. 134-47
[PMID:26662515]
|
