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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc01g009860.2.1 |
| Common Name | LOC100147720, unknown |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
NAC |
| Protein Properties |
Length: 273aa MW: 31335.3 Da PI: 9.9811 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc01g009860.2.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 159.6 | 1.2e-49 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lppGfrF+Ptdeelvv+yLk+kv + +l++ ++i+ev++yk++PwdLp e+e yfFs+++ ky++g+r+nrat+sgyWkatg dk+
Solyc01g009860.2.1 14 LPPGFRFRPTDEELVVQYLKRKVFSFPLPA-SIIPEVEVYKSDPWDLPGD---MEQEKYFFSTKEVKYPNGNRSNRATNSGYWKATGIDKQ 100
79****************************.89***************54...46799********************************* PP
NAM 92 vlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
++ + +++l+glkktLvfy+g++p+g +t+W+mheyrl
Solyc01g009860.2.1 101 IILRgrqqQQQLIGLKKTLVFYRGKSPHGCRTNWIMHEYRL 141
**9976655666***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 273 aa
Download sequence Send
to blast |
MEKVNFLKNG VLRLPPGFRF RPTDEELVVQ YLKRKVFSFP LPASIIPEVE VYKSDPWDLP 60
GDMEQEKYFF STKEVKYPNG NRSNRATNSG YWKATGIDKQ IILRGRQQQQ QLIGLKKTLV 120
FYRGKSPHGC RTNWIMHEYR LANLESNYHP IQGNWVICRI FLKKRGNTKN KEENMTTHDE 180
VRNREIDKNS PVVSVKMSSR DSEALASANS ELKKKASIIF YDFMGRNNSN GVAASTSSSG 240
ITDLTTTNEE SDDHEESTSS FNNFTTFKRK IN*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 9e-50 | 12 | 169 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 9e-50 | 12 | 169 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 9e-50 | 12 | 169 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 9e-50 | 12 | 169 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 9e-50 | 12 | 169 | 15 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 9e-50 | 12 | 169 | 15 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - John I, et al.
Cloning and characterization of tomato leaf senescence-related cDNAs.
Plant Mol. Biol., 1997. 33(4): p. 641-51
[PMID:9132056]
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