PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 538aa MW: 58773.8 Da PI: 4.9031

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g009070.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	36	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+v +G g+W+++ r+ g+ R++k+c++rw ++l Solyc01g009070.2.1 36 KGPWTSAEDVILVDYVMTHGEGNWNAVQRHSGLARCGKSCRLRWANHL 83 79******************************************9986 PP
2	Myb_DNA-binding	53	7.6e-17	89	132	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE++++v++++++G++ W++ a +++ gRt++++k++w++ Solyc01g009070.2.1 89 KGAFTPEEEQRIVELHAKMGNK-WARMAVELP-GRTDNEIKNYWNT 132 799*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.937	31	83	IPR017930	Myb domain
SuperFamily	SSF46689	8.59E-29	33	130	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-12	35	85	IPR001005	SANT/Myb domain
Pfam	PF00249	4.9E-14	36	83	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.4E-23	37	90	IPR009057	Homeodomain-like
CDD	cd00167	5.82E-10	38	83	No hit	No description
PROSITE profile	PS51294	25.445	84	138	IPR017930	Myb domain
SMART	SM00717	7.7E-16	88	136	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-15	89	132	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-25	91	137	IPR009057	Homeodomain-like
CDD	cd00167	1.71E-11	91	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009001	anatomy	fruit
PO:0009010	anatomy	seed

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MSIKSETEER MTSKVDMDSP DEASGGDLGE SVPLKKGPWT SAEDVILVDY VMTHGEGNWN 60 AVQRHSGLAR CGKSCRLRWA NHLRPDLKKG AFTPEEEQRI VELHAKMGNK WARMAVELPG 120 RTDNEIKNYW NTRIKRRQRA GLPIYPADIS FMASQNKQNE ELGAFSSADA QNPDVLGINN 180 FEIPAVEFKK LELTHLLYPP QLADIPARSL LNDPVSNFLS QGHRAPYSST YFLSTTYPAK 240 RIRGSESVFS GSNGDLLNSL QYQNDGSLLA QAQAQPLDFS SYNHNLTYDD QRAISNIVPG 300 GHAYLNGNSS SEPTWAMKLE LPSLQNQTEN WGSPHSALPS LDSVDILIQS PPAGHSESGS 360 LSPSNSGLLD AVLHESQTMK ASNDNSYQGN ETSGNAVNNS CPDLKGCDIY GHPVSPLSQF 420 SASVFSDYAP INESSLHEFP SMATMPGGEI KQEIGDLSPL DDEDNTSNQT IFSSPKTQHA 480 NNHLASKDPF GSCFFDDCDW DCKQIHAVTT SSGQANGHNS CSWDAISAME ATGRMRL*

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MSIKSETEER MTSKVDMDSP DEASGGDLGE SVPLKKGPWT SAEDVILVDY VMTHGEGNWN  60
AVQRHSGLAR CGKSCRLRWA NHLRPDLKKG AFTPEEEQRI VELHAKMGNK WARMAVELPG  120
RTDNEIKNYW NTRIKRRQRA GLPIYPADIS FMASQNKQNE ELGAFSSADA QNPDVLGINN  180
FEIPAVEFKK LELTHLLYPP QLADIPARSL LNDPVSNFLS QGHRAPYSST YFLSTTYPAK  240
RIRGSESVFS GSNGDLLNSL QYQNDGSLLA QAQAQPLDFS SYNHNLTYDD QRAISNIVPG  300
GHAYLNGNSS SEPTWAMKLE LPSLQNQTEN WGSPHSALPS LDSVDILIQS PPAGHSESGS  360
LSPSNSGLLD AVLHESQTMK ASNDNSYQGN ETSGNAVNNS CPDLKGCDIY GHPVSPLSQF  420
SASVFSDYAP INESSLHEFP SMATMPGGEI KQEIGDLSPL DDEDNTSNQT IFSSPKTQHA  480
NNHLASKDPF GSCFFDDCDW DCKQIHAVTT SSGQANGHNS CSWDAISAME ATGRMRL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-29	34	137	5	107	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.19325	0.0	leaf

Function -- GeneRIF ? help Back to Top
LeGAMYBL1 expression increases during germination, upregulated by gibberellic acid GA(3), declines thereafter. GA(3) not required for expression. abscisic acid does not influence expression. Expression also occurs in the endosperm. [LeGAMYBL1] [PMID: 18542997]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g009070.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF175474	0.0	Solanum lycopersicum GAMyb-like1 mRNA, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234357.2	0.0	GAMyb-like1
Refseq	XP_010319228.1	0.0	GAMyb-like1 isoform X1
Refseq	XP_010322046.1	0.0	GAMyb-like1 isoform X1
Refseq	XP_010324959.1	0.0	GAMyb-like1 isoform X1
TrEMBL	A0A3Q7E9E5	0.0	A0A3Q7E9E5_SOLLC; Uncharacterized protein
STRING	Solyc01g009070.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2021	23	58
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.1	2e-75	myb domain protein 33

Link Out ? help Back to Top
Phytozome	Solyc01g009070.2.1
Entrez Gene	100037511

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Gong X,Bewley DJ A GAMYB-like gene in tomato and its expression during seed germination. Planta, 2008. 228(4): p. 563-72 [PMID:18542997]