PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g006930.2.1

Common Name

LOC101257995

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YA

Protein Properties

Length: 312aa MW: 34242.8 Da PI: 10.055

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g006930.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	87.9	1.4e-27	143	197	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p++VNaKQy++Il+RR++Rak e kk k rkpylh SRh hAlrRpRg+gGrF Solyc01g006930.2.1 143 GPIFVNAKQYHGILRRRKTRAKEME-KKA-LKPRKPYLHLSRHLHALRRPRGCGGRF 197 69*****************9666.555.6***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	8.5E-30	140	200	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	31.034	141	200	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.4E-20	144	166	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.8E-23	144	197	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.4E-20	174	197	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MNTTIFSKGN ERVVQNQSVG TLCSAPWWSN GFMSQSVAYA EPFGQLKSAS VEQQPKGNAT 60 EFTISSGDCK SSANGQKLPN IQAASSVRAA NMDYRGHFEL GFGQSLIYAK HPYGEQCIGL 120 FSAYAPQLSG RIMLPLNLAS DEGPIFVNAK QYHGILRRRK TRAKEMEKKA LKPRKPYLHL 180 SRHLHALRRP RGCGGRFLNT RNMNGTMKAG KTNNMFKTGD VQNFYPTGSQ NSEVLQSDSS 240 NLSSPKETSG SRFFDSSGVA NMYSSDNLDP FLFQNLRPPV QAIPDMMNTG HGIFVSGKWV 300 CTADSCCNLK V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	2e-16	142	198	2	60	HAPB protein
4g92_A	2e-16	142	198	2	60	HAPB protein
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.15857	0.0	fruit\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g006930.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC245817	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-126l2 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004228658.1	0.0	nuclear transcription factor Y subunit A-10
TrEMBL	A0A3Q7ERL1	0.0	A0A3Q7ERL1_SOLLC; Uncharacterized protein
STRING	Solyc01g006930.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3706	23	47
Representative plant	OGRP5136	11	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	5e-35	nuclear factor Y, subunit A10

Link Out ? help Back to Top
Phytozome	Solyc01g006930.2.1
Entrez Gene	101257995

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]