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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Solyc01g005660.1.1 |
| Common Name | LOC101243923 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
MYB |
| Protein Properties |
Length: 309aa MW: 35061.1 Da PI: 6.6175 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc01g005660.1.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 30 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT+eEdell ++v + G g+W+t +++ g+ R++k+c++rw +yl
Solyc01g005660.1.1 30 RGPWTPEEDELLMNYVSKEGEGRWRTLPKKAGLFRCGKSCRLRWMNYL 77
89********************************************97 PP
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| 2 | Myb_DNA-binding | 48.3 | 2.2e-15 | 88 | 128 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+eE++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
Solyc01g005660.1.1 88 PEEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 128
8****************.*********.************996 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010090 | Biological Process | trichome morphogenesis |
| GO:0010468 | Biological Process | regulation of gene expression |
| GO:0048354 | Biological Process | mucilage biosynthetic process involved in seed coat development |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MRTPSSSSSS SLSSRTKIVT PCCTKIGLKR GPWTPEEDEL LMNYVSKEGE GRWRTLPKKA 60
GLFRCGKSCR LRWMNYLRPS VKRGHILPEE EDLILRLHRL LGNRWSLIAG RIPGRTDNEI 120
KNYWNTHLSK KLINQGIDPR THKPLILNNP NSSNSDDNHI ITNKANSSSP SSSSKLANNY 180
NLNTINIPNP IYTPNFQMKE PLRSSINNNN CPGETTSPDD DYQYQSSNVM LANYRDDDMN 240
IVVHDEGDDE MNCCADDVFS SFLNSLINED MFMNCQNQQI NGTLQDFDHF MASSSPSYDQ 300
NNLKTMDE*
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| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Ranocha P,Francoz E,Burlat V,Dunand C
Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
Plant Signal Behav, 2014. 9(11): p. e977734
[PMID:25531128]
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