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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc01g005130.2.1 |
| Common Name | LOC101260165 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
C2H2 |
| Protein Properties |
Length: 251aa MW: 27500.6 Da PI: 6.7193 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc01g005130.2.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 10.8 | 0.0015 | 97 | 119 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C+ C + F ++ L H++ H
Solyc01g005130.2.1 97 FSCNFCRRKFYSSQALGGHQNAH 119
89*****************9988 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 251 aa
Download sequence Send
to blast |
MKPPNFNLES EDESEVSSSQ VASNTSAQEI SPDPYKDNTT NSSCLTNSLN LQQESKAVTL 60
DLTLGFNSGA DTESKGNPEA GSEVVPHPPA AQVSRIFSCN FCRRKFYSSQ ALGGHQNAHK 120
RERTLAKRAM RMGMLSERYA SLASLPLHGS PYRSLGIEAH ASVHQRASQQ QERHMHAIRG 180
GARFEQSYFG VPVYMEDDDM EMFWPGSFRQ VDGVGSNVVL NSGQRSNINF VPMAPPPNTQ 240
PSLPDLNLKL *
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| Functional Description ? help
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| Source |
Description |
| UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC246914 | 8e-08 | Solanum lycopersicum chromosome 3 clone EcoRI0010I07, complete sequence |
| GenBank | AC246981 | 8e-08 | Solanum lycopersicum chromosome 3 clone EcoRI0010I07, complete sequence |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Joseph MP, et al.
The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
Plant Physiol., 2014. 165(3): p. 1203-1220
[PMID:24808098] - Li B, et al.
Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
Plant Cell, 2018. 30(1): p. 178-195
[PMID:29317470]
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