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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc00g196060.2.1 | ||||||||
Common Name | ARF6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ARF | ||||||||
Protein Properties | Length: 354aa MW: 39768.9 Da PI: 9.4499 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.1 | 9.7e-11 | 18 | 59 | 56 | 99 |
TTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 56 sgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+++++r+ Solyc00g196060.2.1 18 PKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNENNQLLLGIRRA 59 679*************************..7888889****997 PP | |||||||
2 | Auxin_resp | 115.3 | 5.4e-38 | 84 | 167 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F++++nPra++seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+W+s+k Solyc00g196060.2.1 84 AAHAAATNSRFTIFFNPRACPSEFVIPLAKYAKAVYhTRVSVGMRFRMLFETEESSIRRYMGTITGIGDLDPVRWPNSHWQSVK 167 79*********************************9789*****************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.573 | 1 | 60 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.02E-13 | 16 | 87 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-15 | 17 | 73 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.0E-8 | 17 | 59 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.27E-6 | 18 | 58 | No hit | No description |
Pfam | PF06507 | 4.0E-33 | 84 | 166 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MYNSLCIYKG INCIICQPKR HLLTTGWSVF VSAKRLVAGD SVIFIWNENN QLLLGIRRAN 60 RPQTVLPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFFNP RACPSEFVIP LAKYAKAVYH 120 TRVSVGMRFR MLFETEESSI RRYMGTITGI GDLDPVRWPN SHWQSVKVGW DESTAGERQP 180 RVSLWEIEPL TTFPMYPSPF SLRLKRPWPP GLPSFPGLSN GDMTMNSQLP WLHGGMGDQG 240 IQSLNFQGFG VTPFMQPRFD ASMLGLQPDI LQAMAALDSS KLANQPLMQF QHIPSTSASS 300 IQSQLLHPSN LQHTFLQGLP ENQLISQAQM LQQQLQCHQS YNTQQQQLQR QXXX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 6e-75 | 7 | 188 | 213 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.6144 | 0.0 | cell culture| flower| fruit| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc00g196060.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM594684 | 0.0 | Solanum lycopersicum auxin response factor 6 (ARF6) mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015061224.1 | 0.0 | auxin response factor 6-like isoform X1 | ||||
Refseq | XP_015061225.1 | 0.0 | auxin response factor 6-like isoform X2 | ||||
Swissprot | A2YG67 | 1e-148 | ARFQ_ORYSI; Auxin response factor 17 | ||||
Swissprot | Q653U3 | 1e-148 | ARFQ_ORYSJ; Auxin response factor 17 | ||||
TrEMBL | E0AD21 | 0.0 | E0AD21_SOLLC; Auxin response factor | ||||
STRING | Solyc00g196060.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5859 | 23 | 34 | Representative plant | OGRP856 | 14 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 1e-146 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Solyc00g196060.2.1 |
Publications ? help Back to Top | |||
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