 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Solyc00g084870.2.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
TCP |
| Protein Properties |
Length: 160aa MW: 17460.9 Da PI: 7.9747 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc00g084870.2.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 106.1 | 5.6e-33 | 41 | 117 | 7 | 74 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec..e 74
+++++hTkv+gR+RRvR+ a+caar+F+L++eLG+ +d++tieWLl++a+pai+++tgt +s++ +c +
Solyc00g084870.2.1 41 SSKDRHTKVNGRGRRVRMLALCAARVFQLTKELGHRTDGETIEWLLRNAEPAIIAATGTgggffsmtpQSQP--NCrlD 117
78*********************************************************9999977433333..35331 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 160 aa
Download sequence Send
to blast |
MSVHLCMLSI FSIVNVNSET NGKTALAVVP TKKKNELSVS SSKDRHTKVN GRGRRVRMLA 60
LCAARVFQLT KELGHRTDGE TIEWLLRNAE PAIIAATGTG GGFFSMTPQS QPNCRLDLCQ 120
PSLEFSGNAY RHMPFTALLL QPVTADDGEE KVAEEDEKQ*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC245580 | 1e-145 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-20d23 map 10, complete sequence |
| GenBank | AC245720 | 1e-145 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-51g19 map 10, complete sequence |
