PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc00g084870.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 160aa MW: 17460.9 Da PI: 7.9747

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc00g084870.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	106.1	5.6e-33	41	117	7	74
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec..e 74 +++++hTkv+gR+RRvR+ a+caar+F+L++eLG+ +d++tieWLl++a+pai+++tgt +s++ +c + Solyc00g084870.2.1 41 SSKDRHTKVNGRGRRVRMLALCAARVFQLTKELGHRTDGETIEWLLRNAEPAIIAATGTgggffsmtpQSQP--NCrlD 117 78*********************************************************9999977433333..35331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.5E-28	41	115	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.034	42	96	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MSVHLCMLSI FSIVNVNSET NGKTALAVVP TKKKNELSVS SSKDRHTKVN GRGRRVRMLA 60 LCAARVFQLT KELGHRTDGE TIEWLLRNAE PAIIAATGTG GGFFSMTPQS QPNCRLDLCQ 120 PSLEFSGNAY RHMPFTALLL QPVTADDGEE KVAEEDEKQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.25784	1e-131	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc00g084870.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC245580	1e-145	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-20d23 map 10, complete sequence
GenBank	AC245720	1e-145	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-51g19 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001233821.2	2e-95	TCP transcription factor 19
Swissprot	Q9SJK7	4e-42	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A3Q7IEZ5	2e-98	A0A3Q7IEZ5_SOLLC; Uncharacterized protein
STRING	Solyc00g084870.2.1	1e-116	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	3e-38	TCP family protein

Link Out ? help Back to Top
Phytozome	Solyc00g084870.2.1