 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Solyc00g050430.2.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
Family |
bHLH |
Protein Properties |
Length: 344aa MW: 38441.3 Da PI: 4.4263 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc00g050430.2.1 | genome | ITAG | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 35.9 | 1.4e-11 | 177 | 220 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L
Solyc00g050430.2.1 177 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 220
589*********************66......****************98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MEYYNENGFL EELLSLRSES WDTTNVVPME MSHDFYSNVL NYDNIPLPCT TTSNSFEGYS 60 CNLPFDQQNL INCGTSFCSP FCDELSPPSS FPSQDDFSSI LDDEVGNYSF QNLEMGNNSC 120 NNDNNSNIVI PCKLEENQVC EGAGGRVGGA SSFNIGFCPE IRKSKSKKMD GQPSKNLMAE 180 RRRRKRLNDR LSMLRSVVPK ISKMDRTSIL GDTIDYMKEL LEKINNLQEE MELGPNQLSL 240 MSIFKDVKPN EMLVRNSPKF DVERRSVDTK VEICCAGKPG LLLSTVTTLE ALGLEIQQCV 300 ISSFSDFAMQ ASCSEEMEQR GVVSSEDIKQ ALFRNAGYGG RCL*
|
Nucleic Localization
Signal ? help
Back to Top |
 |
No. |
Start |
End |
Sequence |
1 | 179 | 186 | ERRRRKRL |
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Sharma N, et al.
NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] - Chen YS, et al.
Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]
|