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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sof021066 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
| Family |
LBD |
| Protein Properties |
Length: 73aa MW: 8103.44 Da PI: 8.5021 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PUT-157a-Saccharum_officinarum-54991 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 60 | 6.5e-19 | 4 | 73 | 1 | 64 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvye 64
+C++C+vlr++C++ C+++p++ p++q++++ +++k++G++ +l+ll+a+p+e+ r+++++sl+ye
Sof021066 4 SCNGCRVLRKGCSDACTIRPCLqwidtPEAQANATVFLAKFYGRAGLLNLLAAAPDEHtRPAVFRSLLYE 73
6*****************************************************87777**********8 PP
|
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Sof.15679 | 1e-44 | bud| callus| crown| leaf| meristem| root| stem |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
