PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Publication

Basic Information? help Back to Top

TF ID

Sof020395

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

C3H

Protein Properties

Length: 112aa MW: 12745 Da PI: 9.4717

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17343073	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36	1.2e-11	15	38	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++++rtG C++G +CkF+H+ Sof020395 15 EPDCSYYMRTGMCRFGMTCKFNHP 38 799********************8 PP
2	zf-CCCH	41.5	2.2e-13	60	84	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Sof020395 60 QPECQYYLKTGTCKFGATCKFHHPR 84 799********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.103	12	40	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.8E-4	12	39	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-8	15	38	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.01E-6	16	40	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-4	18	39	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.0E-6	57	84	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.244	57	85	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.1E-11	60	84	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-7	60	86	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.1E-6	63	85	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MAPMELGPYP ERVGEPDCSY YMRTGMCRFG MTCKFNHPAH RKLAVAAARM KGEYPQRIGQ 60 PECQYYLKTG TCKFGATCKF HHPREKAAMA TPVQVDELGY PLRPMKRSVL II

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.3082	0.0	callus\| inflorescence\| meristem\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002450713.1	5e-66	zinc finger CCCH domain-containing protein 63
Swissprot	Q2R4J4	8e-63	C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBL	A0A1Z5RI56	6e-66	A0A1Z5RI56_SORBI; Uncharacterized protein
TrEMBL	A0A1Z5RII6	1e-64	A0A1Z5RII6_SORBI; Uncharacterized protein
STRING	Sb05g013190.1	2e-65	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	2e-53	zinc finger protein 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]