PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Basic Information? help Back to Top

TF ID

Sof020341

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

G2-like

Protein Properties

Length: 114aa MW: 11813.8 Da PI: 4.3561

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17289420	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	50.4	4.8e-16	83	114	2	33
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktil 33 prlrWtpeLH +F++av++LGG+++AtPk +l Sof020341 83 PRLRWTPELHLCFLRAVDRLGGQDRATPKLVL 114 9****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-13	79	114	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-5	80	113	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.4E-11	82	113	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MEGVSSKGFD DESSADQLLP SVGEAGDDGE GDDAGGADVP RGHDGSSSNS STVELDEAGG 60 DSGRMAAGAS PSSVRPYVRS KNPRLRWTPE LHLCFLRAVD RLGGQDRATP KLVL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.16568	0.0	inflorescence\| root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021321607.1	1e-51	uncharacterized protein LOC8064764
TrEMBL	C5YQ15	3e-50	C5YQ15_SORBI; Uncharacterized protein
STRING	Sb08g000510.1	5e-51	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	1e-21	G2-like family protein