PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Function |

Publication

Basic Information? help Back to Top

TF ID

Sof020123

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

HD-ZIP

Protein Properties

Length: 121aa MW: 13860.7 Da PI: 9.7576

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-22995	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.5	3.1e-20	32	86	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +f++eq++ Le++F+ + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k Sof020123 32 KNKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 86 67789*************************************************9 PP
2	HD-ZIP_I/II	109.9	1.7e-35	33	116	2	85
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 +k+r+s+eq+k+LE++F +++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y + ++ yd + e+ +ke++ Sof020123 33 NKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYXRARDDYDXALCSYESXQKEKH 116 79***********************************************************************99999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.13E-20	20	90	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-20	20	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.329	28	88	IPR001356	Homeobox domain
SMART	SM00389	1.9E-16	31	92	IPR001356	Homeobox domain
CDD	cd00086	9.21E-14	32	89	No hit	No description
Pfam	PF00046	1.3E-17	32	86	IPR001356	Homeobox domain
PRINTS	PR00031	3.0E-6	59	68	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	63	86	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.0E-6	68	84	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MDGEDDVPEW MMEVGGAGGK GGKGGGGGPL DKNKKRFSEE QIKSLESMFA TQTKLEPRQK 60 LQLARELGLQ PRQVAIWFQN KRARWKSKQL EREYXRARDD YDXALCSYES XQKEKHAPLK 120 X

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	27	GGKGGGGG

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269\|PubMed:10732669, ECO:0000269\|PubMed:17999151}.
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269\|PubMed:10732669, ECO:0000269\|PubMed:17999151}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002462710.1	2e-60	homeobox-leucine zipper protein HOX6
Swissprot	Q651Z5	2e-48	HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
Swissprot	Q9XH35	2e-48	HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBL	C5X657	4e-59	C5X657_SORBI; Uncharacterized protein
STRING	Sb02g030660.1	7e-60	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	4e-31	homeobox 7

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]