PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof019425 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 139aa MW: 15078.6 Da PI: 7.4061 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 36.8 | 1.3e-11 | 3 | 117 | 2 | 88 |
GAGA_bind 2 dddgsre.rnkgyyepaaslkenlglqlmssia.erdaki..........rernlalsekkaavaerd...........................maflq 62 d+dgs rn+g+y+ k nlglqlmss++ +rd+k + ++ a ++ m+f + Sof019425 3 DEDGSLGiRNWGFYDTV---KGNLGLQLMSSVPpDRDTKSllpngaflqhHGHHNAPHQL-------HmqhsqhprgpaaggasggmptesqpihMDFSR 92 45677779******987...************99******77777666653333333333.......02233344669********************** PP GAGA_bind 63 rdkalaernkalverdnkllalllve 88 ++++l++ ++ ++ ++k+l+ ++ Sof019425 93 NEAWLHQ-SHHQHPCEQKVLHSRSIR 117 *******.888888899988876554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 6.2E-5 | 1 | 138 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 2.3E-15 | 3 | 119 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MDDEDGSLGI RNWGFYDTVK GNLGLQLMSS VPPDRDTKSL LPNGAFLQHH GHHNAPHQLH 60 MQHSQHPRGP AAGGASGGMP TESQPIHMDF SRNEAWLHQS HHQHPCEQKV LHSRSIRPAG 120 HAGHSGHGGH SGHVGHICA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.11299 | 0.0 | meristem| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:12795701}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002461880.1 | 1e-75 | protein Barley B recombinant | ||||
Refseq | XP_021309578.1 | 1e-75 | protein Barley B recombinant | ||||
Swissprot | Q8GUC3 | 1e-26 | BBR_HORVU; Protein Barley B recombinant | ||||
TrEMBL | C5X4B5 | 3e-74 | C5X4B5_SORBI; Uncharacterized protein | ||||
STRING | Sb02g009750.1 | 4e-75 | (Sorghum bicolor) | ||||
STRING | Sb02g009782.1 | 4e-75 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 8e-09 | basic pentacysteine 2 |