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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sof018934 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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| Family |
MYB_related |
| Protein Properties |
Length: 149aa MW: 16569.4 Da PI: 10.4452 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PUT-157a-Saccharum_officinarum-44603 | PU_ref | plantGDB | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 44.3 | 4.2e-14 | 35 | 79 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky
Sof018934 35 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 79
789*****************77.*********.*************9 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 149 aa
Download sequence Send
to blast |
MVSASAPPPP QSDAAGSGED ASKKVRKPYT ITKSRESWTE QEHDKFLEAL QLFDRDWKKI 60
EAFVGSKTVI QIRSHAQKYF LKVQKNGTSE HVPPPRPKRK AAHPYPQKAS KNEPNYGLKT 120
DSSSIHRNPG MNVSGSSWAH KSIPQACGX
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
| Publications
? help Back to Top |
- Manfield IW, et al.
Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
[PMID:16845059] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Fogelmark K,Troein C
Rethinking transcriptional activation in the Arabidopsis circadian clock.
PLoS Comput. Biol., 2014. 10(7): p. e1003705
[PMID:25033214] - Xing H, et al.
LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors.
Plant Signal Behav, 2015. 10(3): p. e1010888
[PMID:25848708] - Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
Plant Physiol., 2017. 173(4): p. 2308-2322
[PMID:28254761]
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