 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sof018756 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
| Family |
GATA |
| Protein Properties |
Length: 152aa MW: 16585.1 Da PI: 9.8389 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PUT-157a-Saccharum_officinarum-44433 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 58.1 | 1.2e-18 | 69 | 102 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
C++C+ kTp+WR gp g+ktLCnaCG++y++ +
Sof018756 69 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 102
*******************************987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 152 aa
Download sequence Send
to blast |
XRSSGSSHSD PESIAESSPH PAPXMKKKKR AKKPAPPAPA ASSDDNDGDA DYEEGGERAE 60
PQGGAVRRCT HCQIEKTPQW RAGPLGPKTL CNACGVRYKS GRLFPEYRPA ASPTFVPSIH 120
SNSHKKVVEM RQKAVRSGDP SCDLLQFIRR RD
|
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Sof.2627 | 1e-115 | crown| inflorescence| leaf| meristem| root| stem |
