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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof018626 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||
Protein Properties | Length: 154aa MW: 17825.4 Da PI: 10.1255 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.8 | 8.4e-53 | 10 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrF P+deelv++yL+kkv+++++ ++ evd++ ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ev + +g++v Sof018626 10 LPPGFRFYPSDEELVCHYLHKKVANERIAQ-GTLVEVDLHAREPWELPEVAKLTATEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREVRR-GGAVV 107 79*************************998.88***************87788899*************************************9.***** PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g++ktLvfy+grap+g+k+ Wvmhe+rl Sof018626 108 GMRKTLVFYRGRAPNGVKSGWVMHEFRL 135 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-60 | 7 | 150 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.542 | 10 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-29 | 11 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MALREIESTL PPGFRFYPSD EELVCHYLHK KVANERIAQG TLVEVDLHAR EPWELPEVAK 60 LTATEWYFFS FRDRKYATGS RTNRATKTGY WKATGKDREV RRGGAVVGMR KTLVFYRGRA 120 PNGVKSGWVM HEFRLDAPHS PPREDWVLCK GVQK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-51 | 5 | 154 | 10 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452475.1 | 1e-104 | NAC domain-containing protein 100 | ||||
Refseq | XP_025822293.1 | 1e-104 | NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 3e-62 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A3L6QK74 | 1e-103 | A0A3L6QK74_PANMI; Uncharacterized protein | ||||
STRING | Sb04g026440.1 | 1e-103 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 6e-74 | NAC domain containing protein 74 |
Publications ? help Back to Top | |||
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