 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sof018224 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
| Family |
LBD |
| Protein Properties |
Length: 161aa MW: 16616.2 Da PI: 9.142 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PUT-157a-Saccharum_officinarum-333133730 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 96.2 | 3.4e-30 | 4 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94
+C++C+vlr++C++ C+++p++ p++q++++ +++k++G++ +l+l++a+p++ r+++++sl+yeA+ r+ +PvyGavg++++++++++q+++e+
Sof018224 4 SCNGCRVLRKGCSDACTIRPCLqwiksPDAQANATVFLAKFYGRAGLLNLIAAAPTDAlRPAVFRSLLYEACGRIVNPVYGAVGLLWSGTWHMCQAAVEA 103
6*****************************************************99988****************************************9 PP
DUF260 95 allke 99
+l ++
Sof018224 104 VLKGA 108
98776 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 161 aa
Download sequence Send
to blast |
MRLSCNGCRV LRKGCSDACT IRPCLQWIKS PDAQANATVF LAKFYGRAGL LNLIAAAPTD 60
ALRPAVFRSL LYEACGRIVN PVYGAVGLLW SGTWHMCQAA VEAVLKGAPI VQVSPDDAAG 120
PPIHAAAAAA AAAAYDIRHV FPKSSSSNKQ SAAAAAAGAP P
|
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Sof.15679 | 1e-169 | bud| callus| crown| leaf| meristem| root| stem |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
