 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sof017776 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
| Family |
C2H2 |
| Protein Properties |
Length: 168aa MW: 18708.3 Da PI: 5.5514 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Sof#S17261646 | PU_ref | Unigene | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.6 | 0.0002 | 106 | 128 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+C+ C++++++ +L+ H + H
Sof017776 106 SCSVCSRVYPTLRLLNIHVSEaH 128
6*****************99877 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 168 aa
Download sequence Send
to blast |
MQQKPDDGMA EAAPKAAAVT GPELGFWLAA RRRLAPDDPF FAAGDLEREL LAKHLALDFS 60
EDDRNQLEKM EVASTCTVFC PIASCGAHLD CLEEFEDHYV TRHTASCSVC SRVYPTLRLL 120
NIHVSEAHDS YFQAKVGPWF PMYECLAEGR GMKLKNSKSP APHLIDRP
|
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT5G14140.1 | 3e-59 | zinc ion binding;nucleic acid binding;zinc ion binding |
