PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof015594
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C3H
Protein Properties Length: 196aa    MW: 20406 Da    PI: 10.9856
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-113241PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-073660226
               -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
               k ++C  f+ t  C++G++C+F H 
  Sof015594 36 KSKPCTKFFSTAGCPFGASCHFLHN 60
               7789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.9153462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-63562IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-83660IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-53660IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-496119IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDTGRKRTAP EAGANGAVGP KRARESETTQ MGVGSKSKPC TKFFSTAGCP FGASCHFLHN  60
FPGGYQAVSK MTNLGGPPVP APPGRMPMGP GGPDGPPSPA VKTRLCNKYN TAEGCKWGKQ  120
MPLCSWRERA WKAPADGQLD GSSSNGARAX RSLHAPGNAS PRHGSFLTIG ASATAKIRAM  180
HPLLRHHGKG GTTQSI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159827.16e-64zinc finger CCCH domain-containing protein 44-like isoform X2
SwissprotQ7F8R02e-57C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A3L6S1114e-70A0A3L6S111_PANMI; Zinc finger CCCH domain-containing protein 44-like isoform X1
STRINGPavir.Db00748.1.p2e-62(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-25C3H family protein