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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof013580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||
Protein Properties | Length: 217aa MW: 24069.7 Da PI: 9.7982 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 79.8 | 6e-25 | 66 | 206 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWkat 86 lp+G++F+Ptd+el+ ++L+ k++ + ++++ i+ +i++++P++Lp v ++ + + + k+y+tg+rk+r+++ + +W++t Sof013580 66 LPAGVKFDPTDHELL-DHLEGKARPDArklhplIDEFIPtIEGEnGICYTHPERLP-GVGKDGLSGTSSTAHPKAYTTGTRKRRKVHtdeqggETRWHKT 163 799************.99****998885665443333333665557**********.444444455677889999*********744446555778**** PP NAM 87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 gk++ vl+ +g+l+g kk Lv+y g+++k+ekt vmh+y+l Sof013580 164 GKTRXVLT-NGKLKGYKKNLVLYtnYGKQRKPEKTXLVMHQYHL 206 ********.999***********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-26 | 58 | 211 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.81 | 66 | 217 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.0E-11 | 67 | 206 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MTWCNSFNDV RAVENNLATA AAVAAAKKQQ QASSHVNLIR TCPSCGHRAQ YEQVQAAATI 60 QDLPGLPAGV KFDPTDHELL DHLEGKARPD ARKLHPLIDE FIPTIEGENG ICYTHPERLP 120 GVGKDGLSGT SSTAHPKAYT TGTRKRRKVH TDEQGGETRW HKTGKTRXVL TNGKLKGYKK 180 NLVLYTNYGK QRKPEKTXLV MHQYHLGSDK EEKDGKL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021311090.1 | 1e-132 | NAC domain-containing protein 73 | ||||
Refseq | XP_025814631.1 | 1e-132 | NAC domain-containing protein 73-like isoform X1 | ||||
Swissprot | O49459 | 2e-93 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A1B6Q575 | 1e-131 | A0A1B6Q575_SORBI; Uncharacterized protein | ||||
TrEMBL | A0A2S3HT27 | 1e-131 | A0A2S3HT27_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DIP1 | 1e-131 | A0A2T7DIP1_9POAL; Uncharacterized protein | ||||
STRING | Sb03g030750.1 | 1e-131 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 4e-93 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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