|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sof013009 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
Family |
WRKY |
Protein Properties |
Length: 222aa MW: 24424.8 Da PI: 10.6131 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PUT-157a-Saccharum_officinarum-48462 | PU_ref | plantGDB | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 41.9 | 2.1e-13 | 189 | 218 | 1 | 30 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa 30
++Dgyn rKYGqK+ k++++pr+Y+rC+++
Sof013009 189 VKDGYNGRKYGQKVTKDNPCPRAYFRCSFR 218
58*************************986 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 222 aa
Download sequence Send
to blast |
XGRVGKRNSS APPSLAVRVA VLDIWVYAIE GLTILVWATA ADMDPWVGQP SLSLDLNVGP 60 PTARPAVPAK TKVLVEENFL AVKKDREVEA LEAELRRVGE ENKRLSEMLR AVVTKYTELQ 120 GQVNDMVAAA AANRQQSSTS EGGSSASPSK KRIVSVTAAA FRRAVREECK PKVSRRFVHA 180 DPAELSLVVK DGYNGRKYGQ KVTKDNPCPR AYFRCSFRRR AR
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:23462973). Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Regulates negatively the basal defense responses to the compatible fungus M.oryzae (PubMed:23462973, PubMed:21726398). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:21961049, ECO:0000269|PubMed:23462973}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). {ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:23462973}. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Zhang Y,Wang L
The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants. BMC Evol. Biol., 2005. 5: p. 1 [PMID:15629062] - Wu KL,Guo ZJ,Wang HH,Li J
The WRKY family of transcription factors in rice and Arabidopsis and their origins. DNA Res., 2005. 12(1): p. 9-26 [PMID:16106749] - Berri S, et al.
Characterization of WRKY co-regulatory networks in rice and Arabidopsis. BMC Plant Biol., 2009. 9: p. 120 [PMID:19772648] - Delteil A, et al.
Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence. Mol. Plant Pathol., 2012. 13(1): p. 72-82 [PMID:21726398] - Peng Y,Bartley LE,Canlas P,Ronald PC
OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity. Rice (N Y), 2010. 3(1): p. 36-42 [PMID:21961049] - Chujo T, et al.
OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus. Plant Mol. Biol., 2013. 82(1-2): p. 23-37 [PMID:23462973] - Yazawa T,Kawahigashi H,Matsumoto T,Mizuno H
Simultaneous transcriptome analysis of Sorghum and Bipolaris sorghicola by using RNA-seq in combination with de novo transcriptome assembly. PLoS ONE, 2013. 8(4): p. e62460 [PMID:23638091]
|