 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sof012917 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family |
MYB |
Protein Properties |
Length: 223aa MW: 25788.6 Da PI: 9.3716 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PUT-157a-Saccharum_officinarum-381133732 | PU_ref | plantGDB | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 38.3 | 3.1e-12 | 31 | 78 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
++WT+eE +++ +a +q + +W+++a++++ ++t+ +++++++++
Sof012917 31 DAWTAEENKQFEKALAQIDRNapdRWEKVAEMVP-RKTADDVRNHYHDL 78
58*****************99*************.***********976 PP
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2 | Myb_DNA-binding | 47.6 | 3.9e-15 | 134 | 178 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+WT+eE+ l++ + kq+G g+W+ I+r+ ++Rt+ q+ s+ qky
Sof012917 134 PWTEEEHRLFLMGLKQYGRGDWRNISRKYVTTRTPTQVASHAQKY 178
8*******************************************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 223 aa
Download sequence Send
to blast |
MAEAWRPMML APTAPCFWQQ DTHSVFWRRG DAWTAEENKQ FEKALAQIDR NAPDRWEKVA 60 EMVPRKTADD VRNHYHDLEN DVGFIEAGLV PFPHYSSSVP SSGFTLEDWD GAFRRGYCLK 120 RARGSDQERK KGVPWTEEEH RLFLMGLKQY GRGDWRNISR KYVTTRTPTQ VASHAQKYFI 180 RLNSGGKDKR RSSIHDITTV NLPDEDHGNA PPSAAFFGNT RRX
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}. |
Functional Description ? help
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Source |
Description |
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |