 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sof012906 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
| Family |
C3H |
| Protein Properties |
Length: 223aa MW: 24563.7 Da PI: 8.5346 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PUT-157a-Saccharum_officinarum-23417 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 36.7 | 7e-12 | 8 | 33 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++ C f++ tGtCkyG++CkF H++
Sof012906 8 GQKDCAFYMSTGTCKYGETCKFDHPQ 33
7889********************97 PP
|
| 2 | zf-CCCH | 38.2 | 2.3e-12 | 110 | 134 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++ C+f+ +tG Ck+G++CkF+H++
Sof012906 110 EPVCSFYVKTGKCKFGANCKFNHPK 134
789********************96 PP
|
| 3 | zf-CCCH | 39.2 | 1.2e-12 | 190 | 215 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
++++ C+f+++tG CkyG+ C+F+H+
Sof012906 190 PGEVDCSFYMKTGSCKYGSICRFNHP 215
57899********************9 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 7.8E-6 | 6 | 33 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.49E-6 | 6 | 33 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.765 | 6 | 34 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.0E-10 | 8 | 33 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 12 | 32 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.13 | 56 | 82 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.361 | 56 | 83 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF14608 | 0.2 | 69 | 81 | No hit | No description |
| SMART | SM00356 | 1.1E-6 | 107 | 134 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.286 | 107 | 135 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 8.11E-7 | 107 | 135 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 7.7E-10 | 110 | 134 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.5E-5 | 112 | 132 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.1E-6 | 189 | 216 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.901 | 189 | 217 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.4E-10 | 191 | 215 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.16E-5 | 193 | 216 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 8.7E-5 | 195 | 214 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 223 aa
Download sequence Send
to blast |
XTYPQRPGQK DCAFYMSTGT CKYGETCKFD HPQWVPEGGV PNWKEVPNVE DSYPERPGEP 60
DCPYLLSSRC KFKSKCKFNH PKKMVNALAT GTDSESLIAD SAIFPVRPSE PVCSFYVKTG 120
KCKFGANCKF NHPKPKDTKT PPLIAKETIY TATTDAAVHI GAADDSVPAK KHVPTAPAEA 180
HNAKGLPIRP GEVDCSFYMK TGSCKYGSIC RFNHPDRPGL FFS
|
