PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Sof012633

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

MYB_related

Protein Properties

Length: 226aa MW: 25458.2 Da PI: 10.0644

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-698133728	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.1	6.4e-16	24	68	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+ E++++++a k++G W +I +++g ++t+ q++s+ qk+ Sof012633 24 RERWTEAEHKRFLEALKLYGRA-WQRIEEHVG-TKTAVQIRSHAQKF 68 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.86E-17	18	74	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.147	19	73	IPR017930	Myb domain
TIGRFAMs	TIGR01557	3.1E-17	22	71	IPR006447	Myb domain, plants
SMART	SM00717	6.5E-12	23	71	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-13	24	67	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-8	24	64	IPR009057	Homeodomain-like
CDD	cd00167	7.49E-9	26	69	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MELNSSGEET VVKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRAWQRIE EHVGTKTAVQ 60 IRSHAQKFFT KLEKEAMNNG TSPGQAHDID IPPPRPKRKP NSPYPRKSGL SSETTTKELP 120 NDKSTKPNMP LSNGNVQMAG DASLQKFQRK ELSEKGSCSE VLNLFRDAPS ASFSSVNKSS 180 SNHGAPRGIE ASKTKIRDMT IMENNSLNPN TQEDVKENSD QENEKX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020400457.1	1e-134	LHY protein isoform X2
TrEMBL	A0A0C6WCN0	1e-139	A0A0C6WCN0_9POAL; ScMYB43 protein
STRING	Sb07g003870.1	1e-127	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.3	2e-44	MYB_related family protein