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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sof011876 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family |
bZIP |
Protein Properties |
Length: 233aa MW: 24078.9 Da PI: 9.7647 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PUT-157a-Saccharum_officinarum-129394 | PU_ref | plantGDB | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 31.1 | 5e-10 | 206 | 231 | 1 | 26 |
XXXXCHHHCHHHHHHHHHHHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKka 26
e+elkr+rrkq+NRe+ArrsR+RK+a
Sof011876 206 ERELKRQRRKQSNRESARRSRLRKQA 231
89***********************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 233 aa
Download sequence Send
to blast |
XPPGVYAHPS MPPGAHPFTP YAITSPNGNA DATGTTAAAG DTDGKPSEGK DKSPTKRSKG 60 SLGSLNMLTG KNPSEHGKTS GASANGATSQ SGESGSDSSS EGSEGNSHND SHHKESGQEQ 120 DGDVRSSQNG ASRSPSEGKL NQAMTIVPTI VPVPSSGPVT GPTTNLNIGM DYWANTASSA 180 PAIHGKVTPT TVPGAVVPAE QWIQDERELK RQRRKQSNRE SARRSRLRKQ AGL
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 222 | 228 | RRSRLRK |
2 | 222 | 229 | RRSRLRKQ |
Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Sof.487 | 1e-155 | bud| callus| crown| inflorescence| leaf| meristem| root| seed| stem |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems and leaves. {ECO:0000269|Ref.1}. |
Uniprot | TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems and leaves. {ECO:0000269|Ref.2}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}. |
UniProt | Probable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.2}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}. |
UniProt | INDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.2). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.2). {ECO:0000269|Ref.2}. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT2G35530.1 | 4e-45 | basic region/leucine zipper transcription factor 16 |