PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof011876
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bZIP
Protein Properties Length: 233aa    MW: 24078.9 Da    PI: 9.7647
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-129394PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15e-10206231126
                XXXXCHHHCHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKka 26 
                e+elkr+rrkq+NRe+ArrsR+RK+a
  Sof011876 206 ERELKRQRRKQSNRESARRSRLRKQA 231
                89***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165962.0E-3551179No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-8200231No hitNo description
PfamPF001701.5E-7206231IPR004827Basic-leucine zipper domain
CDDcd147023.47E-12211231No hitNo description
PROSITE patternPS000360213228IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
XPPGVYAHPS MPPGAHPFTP YAITSPNGNA DATGTTAAAG DTDGKPSEGK DKSPTKRSKG  60
SLGSLNMLTG KNPSEHGKTS GASANGATSQ SGESGSDSSS EGSEGNSHND SHHKESGQEQ  120
DGDVRSSQNG ASRSPSEGKL NQAMTIVPTI VPVPSSGPVT GPTTNLNIGM DYWANTASSA  180
PAIHGKVTPT TVPGAVVPAE QWIQDERELK RQRRKQSNRE SARRSRLRKQ AGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222228RRSRLRK
2222229RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.4871e-155bud| callus| crown| inflorescence| leaf| meristem| root| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems and leaves. {ECO:0000269|Ref.1}.
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems and leaves. {ECO:0000269|Ref.2}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}.
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}.
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.2). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.2). {ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131383.11e-130uncharacterized protein LOC100192709
RefseqXP_008672076.11e-130putative bZIP transcription factor superfamily protein isoform X1
RefseqXP_008672077.11e-130putative bZIP transcription factor superfamily protein isoform X1
SwissprotA0A3B6MPP51e-105BZP1D_WHEAT; bZIP transcription factor 1-D
SwissprotB6E1071e-105BZP1B_WHEAT; bZIP transcription factor 1-B
TrEMBLA0A1D6MUM41e-130A0A1D6MUM4_MAIZE; BZIP transcription factor 16
STRINGPavir.Cb01814.1.p1e-133(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.14e-45basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]