PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sof011381 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 239aa MW: 24681.6 Da PI: 9.593 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.6 | 2.6e-24 | 151 | 194 | 2 | 45 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Sof011381 151 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 194 69***************************************986 PP | |||||||
2 | QLQ | 62.6 | 1e-21 | 83 | 119 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKyLaan P+P+ Ll +i++ Sof011381 83 GPFTPSQWMELEHQALIYKYLAANSPIPHSLLIPIRR 119 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.2E-12 | 83 | 119 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.0E-16 | 84 | 118 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.953 | 84 | 119 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.65 | 150 | 194 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.4E-20 | 152 | 193 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
AAKAAAPFLL GSCSPGHGGE QMLSFSSAAA AASSCASTAA VAAAVAADGG AMPLYYGTPA 60 SCSGLSSVSL STSMQGAMAR VRGPFTPSQW MELEHQALIY KYLAANSPIP HSLLIPIRRS 120 LASSPYPPSY FGTSTLGWGS FQLGYSGNAD LEPGRCRRTD GKKWRCSRDA VADQKYCERH 180 MNRGRHRSRK HVEGQPGHAA KAMSAVAAAA ALAGAGATAA GLTVNQHQQP AKSYAXGCD |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466526.2 | 1e-128 | growth-regulating factor 6 | ||||
Swissprot | Q6AWY3 | 1e-100 | GRF6_ORYSJ; Growth-regulating factor 6 | ||||
TrEMBL | C5WLZ4 | 1e-127 | C5WLZ4_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G178261_P01 | 1e-121 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37740.1 | 5e-51 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|