PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

Sof011381

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

GRF

Protein Properties

Length: 239aa MW: 24681.6 Da PI: 9.593

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-499133728	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.6e-24	151	194	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Sof011381 151 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 194 69***************************************986 PP
2	QLQ	62.6	1e-21	83	119	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKyLaan P+P+ Ll +i++ Sof011381 83 GPFTPSQWMELEHQALIYKYLAANSPIPHSLLIPIRR 119 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.2E-12	83	119	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.0E-16	84	118	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.953	84	119	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.65	150	194	IPR014977	WRC domain
Pfam	PF08879	1.4E-20	152	193	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
AAKAAAPFLL GSCSPGHGGE QMLSFSSAAA AASSCASTAA VAAAVAADGG AMPLYYGTPA 60 SCSGLSSVSL STSMQGAMAR VRGPFTPSQW MELEHQALIY KYLAANSPIP HSLLIPIRRS 120 LASSPYPPSY FGTSTLGWGS FQLGYSGNAD LEPGRCRRTD GKKWRCSRDA VADQKYCERH 180 MNRGRHRSRK HVEGQPGHAA KAMSAVAAAA ALAGAGATAA GLTVNQHQQP AKSYAXGCD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466526.2	1e-128	growth-regulating factor 6
Swissprot	Q6AWY3	1e-100	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	C5WLZ4	1e-127	C5WLZ4_SORBI; Uncharacterized protein
STRING	GRMZM2G178261_P01	1e-121	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	5e-51	growth-regulating factor 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]