PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof011056
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bZIP
Protein Properties Length: 243aa    MW: 25870.3 Da    PI: 9.5703
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-58743PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.48.3e-15161210352
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                + +r++r++kNRe+A rsR+RK+a+i+eLe  v +Le+eN +L  e ee 
  Sof011056 161 AMQRQKRMIKNRESAARSRERKQAYIAELESLVTQLEEENAELLREQEER 210
                689*************************************9988776553 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-8159221IPR004827Basic-leucine zipper domain
PfamPF001709.3E-14161218IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.76161209IPR004827Basic-leucine zipper domain
CDDcd147079.67E-19163213No hitNo description
Gene3DG3DSA:1.20.5.1702.5E-13164219No hitNo description
SuperFamilySSF579595.44E-11164211No hitNo description
PROSITE patternPS000360166181IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
RLAQAASRPG GGGGGSGLGS MNVEELLRGI YGDMPTPAPP ASEPERPMSP APAPEIATRK  60
TAEEVWKEIT GGGASGEAVA PVAAQAVVPA GGAGAGTGGP EMTLEDFLAR EGAMKDDEVR  120
ISGPSAPVMG FLAGTEGVGV AGGGGGRGRK RQLMDPVDRA AMQRQKRMIK NRESAARSRE  180
RKQAYIAELE SLVTQLEEEN AELLREQEER HQKRLKELLE RVTPVILRKK PSRDLRRTNS  240
MQW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.152110.0meristem| root| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458823.11e-124G-box-binding factor 4
SwissprotQ0JHF13e-89BZP12_ORYSJ; bZIP transcription factor 12
TrEMBLC5XQN21e-123C5XQN2_SORBI; Uncharacterized protein
STRINGSb03g040970.11e-124(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.13e-19G-box binding factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]