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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof010527 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||
Protein Properties | Length: 250aa MW: 27316 Da PI: 4.9467 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 32.5 | 2.5e-10 | 2 | 28 | 102 | 128 |
NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 +kktLvf++grap+g++t W+mheyr Sof010527 2 VKKTLVFHRGRAPRGHRTAWIMHEYRT 28 79***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 18.066 | 1 | 49 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.28E-11 | 2 | 49 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
XVKKTLVFHR GRAPRGHRTA WIMHEYRTAE PQLQQGQNGS FVLYRLFNKN EEESEASDAA 60 DSPSTSSPAI APAVKAENLS QPASAQMSHL LATVSSNEPT SNQQGDDHLL DVLAQLPDLQ 120 PEHTFDGFPT ITSPMRPYTD HPFLGNAGEQ DLSAYIDSII AHQDLEDVLA SPSLADMVEQ 180 ATVNVEPHPT SLPVLDNNSN SKEIAENGRG KVGSETLLLI KGTDGTSAFG WWSSAPKNYN 240 LMKTMLTLHR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.10062 | 0.0 | inflorescence| leaf| meristem| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002436309.2 | 1e-147 | NAC domain-containing protein 69 isoform X1 | ||||
Refseq | XP_021304841.1 | 1e-147 | NAC domain-containing protein 69 isoform X2 | ||||
TrEMBL | C5Z212 | 1e-145 | C5Z212_SORBI; Uncharacterized protein | ||||
STRING | Sb10g000101.1 | 1e-146 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.2 | 2e-13 | NAC 014 |