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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof010476 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||
Protein Properties | Length: 251aa MW: 27597.3 Da PI: 8.6711 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.1 | 1.1e-50 | 9 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtd+elv++yL +k+ g +l + vi+evd+yk++Pw+Lp+k++++ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+v s + v Sof010476 9 LPPGFRFHPTDDELVMYYLLRKCGGLPLAA-PVIAEVDLYKFDPWQLPEKAYGGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPVGS--PRPV 105 79*************************999.89***************999999**************************************99..779* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 +kk Lvfy g+ pkg+kt+W+mheyrl Sof010476 106 AIKKALVFYAGKPPKGVKTNWIMHEYRL 133 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-61 | 6 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.774 | 9 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-26 | 10 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDCGGALQLP PGFRFHPTDD ELVMYYLLRK CGGLPLAAPV IAEVDLYKFD PWQLPEKAYG 60 GEKEWYFFSP RDRKYPNGSR PNRAAGTGYW KATGADKPVG SPRPVAIKKA LVFYAGKPPK 120 GVKTNWIMHE YRLADVDRSA AARKKTNNAL RLDDWVLCRI YNKKGVIERY DTVDDDGDDA 180 VVAEDVKPAP APASKNNPRA GARGGAAAAP MKVEFPEYGG YYDYDDLLDA VGGDAVLSPL 240 VGPGSNRPRA W |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-75 | 2 | 169 | 8 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.21317 | 1e-172 | callus| root| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and embryo. Weakly expressed in callus. {ECO:0000269|PubMed:10660065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002450434.1 | 1e-134 | NAC domain-containing protein 71 | ||||
Swissprot | Q53NF7 | 1e-117 | NAC71_ORYSJ; NAC domain-containing protein 71 | ||||
TrEMBL | A0A1Z5RGY2 | 1e-132 | A0A1Z5RGY2_SORBI; Uncharacterized protein | ||||
STRING | Sb05g005450.1 | 1e-133 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 2e-94 | NAC domain containing protein 32 |
Publications ? help Back to Top | |||
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