 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sof009975 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 258aa MW: 28651.8 Da PI: 6.6524 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PUT-157a-Saccharum_officinarum-109077 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.3 | 5.3e-18 | 113 | 166 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k
Sof009975 113 KKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWK 166
4568999**********************************************9 PP
|
| 2 | HD-ZIP_I/II | 129.4 | 1.5e-41 | 112 | 203 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrl+ eqv++LE++Fe +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+k++n++L +++++L++e+
Sof009975 112 EKKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKADNDALLSHNKKLQAEIV 203
69**************************************************************************************9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 258 aa
Download sequence Send
to blast |
MASNGMASSP SPFFPPNFLL QMQQTPSDHD PQEQHHHHHE HHLPGAPPLH PHHNPFLPSS 60
QCPSLQDFRG MAPMLGKRPM YGADVVVGGE EVNGGGGANE DEMSDDGSQA GEKKRRLNVE 120
QVRTLEKNFE LGNKLEPERK LQLARALGLQ PRQVAIWFQN RRARWKTKQL EKDYDALKRQ 180
LDAVKADNDA LLSHNKKLQA EIVALKGGRE AGSSELINLN KETEASCSNR SENSFEINLD 240
ISRTPASDGP MDPPPPTX
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 160 | 168 | RRARWKTKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
