PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof007517
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family TALE
Protein Properties Length: 321aa    MW: 34627.1 Da    PI: 7.5598
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-60957PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.37e-101271641954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Sof007517 127 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 164
                665559******************************88 PP
2BELL932.8e-301581572
       BELL 15 lleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
               +l+eV++rY+qy+ q+q+v ssFea+ag gsa+ Yt+lAl++iSr+FrcL+daia+q+
  Sof007517  1 MLDEVEQRYRQYHMQMQAVSSSFEAAAGAGSARTYTALALRTISRQFRCLRDAIASQV 58
               9*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075265.2E-26155IPR006563POX domain
SMARTSM005749.1E-5156IPR006563POX domain
PROSITE profilePS5007111.969105168IPR001356Homeobox domain
SMARTSM003891.2E-9108172IPR001356Homeobox domain
CDDcd000866.20E-14108169No hitNo description
SuperFamilySSF466891.07E-17109175IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-29111174IPR009057Homeodomain-like
PfamPF059209.9E-19125164IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MLDEVEQRYR QYHMQMQAVS SSFEAAAGAG SARTYTALAL RTISRQFRCL RDAIASQVRA  60
ASRALGEDAD AAVATGGRTV GSRLRYIDHQ LRQQRALQQL GMMQGGAWRP QRGLPERSVS  120
ILRAWLFEHF LHPYPKDSDK IMLAKQTGLT RSQVSNWFIN ARVRLWKPMV EEMYLEETKD  180
HDGGGGRDND EGKSGGGGSK SGDTVDGVTP RADAMSKSAV RVGGGGAAES ASTNKGIHGS  240
SLLELGGGGD HQHSHAGFYD DDEDGGDDAM GRRLKKARGD EPPALAGAFH GHHVHDMAAL  300
HAQAAAGSRQ QHEEVNQPGA X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A6e-18114172159Homeobox protein Meis2
5bng_B6e-18114172159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.184860.0bud| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001344816.11e-161BEL1-like homeodomain protein 1
RefseqXP_008679683.11e-161BEL1-like homeodomain protein 1 isoform X1
RefseqXP_008679685.11e-161BEL1-like homeodomain protein 1 isoform X1
RefseqXP_020408426.11e-161BEL1-like homeodomain protein 1 isoform X1
SwissprotQ9SJ565e-87BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLK7UPH81e-160K7UPH8_MAIZE; Putative POX domain/homeobox DNA-binding domain family protein
STRINGGRMZM2G458728_P041e-160(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-66BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]