PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Basic Information? help Back to Top

TF ID

Sof004468

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

FAR1

Protein Properties

Length: 208aa MW: 22992.2 Da PI: 8.9947

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17448048	PU_unref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-44110	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	46.4	5.6e-15	77	113	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C Cg + Tp++Rrgpdg++tLCnaCG+ yrk ++ Sof004468 77 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRKGKM 113 6667777777************************876 PP
2	FAR1	50.1	9.4e-16	147	205	1	62
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgC 62 +fYn+YA +vGFsvrks+s+ks++n ++ rtfvCs+eg+++++k+ +++++r tr+ C Sof004468 147 EFYNKYAGHVGFSVRKSTSHKSSENI-TKVRTFVCSREGYNRDKKSL--EAKKPRLDTRIRC 205 6*******************6666.899*********9988..999*******9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	4.2E-6	70	126	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.33E-11	73	125	No hit	No description
Gene3D	G3DSA:3.30.50.10	5.9E-12	76	115	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	8.7E-13	77	112	IPR000679	Zinc finger, GATA-type
CDD	cd00202	5.30E-8	87	114	No hit	No description
Pfam	PF03101	1.1E-12	147	206	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
LPAPNPNPNP ERPKKFAKIA HNFAADYLPG GDAMMHMLVA PDGGGGELQP YGAPPAEQEL 60 ELLRDNADDG LEGHVRCLRC GISGNATPHM RRGPDGPRTL CNACGIAYRK GKMRRMIEAK 120 PPIDEASLAK LVPEVGMEFV SEEKAYEFYN KYAGHVGFSV RKSTSHKSSE NITKVRTFVC 180 SREGYNRDKK SLEAKKPRLD TRIRCPEN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.16019	0.0	inflorescence\| leaf\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021309418.1	1e-120	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1W0W7B6	1e-119	A0A1W0W7B6_SORBI; Uncharacterized protein
TrEMBL	A0A1W0W7F1	1e-119	A0A1W0W7F1_SORBI; Uncharacterized protein
STRING	MLOC_70827.2	1e-116	(Hordeum vulgare)
STRING	GRMZM2G114461_P01	1e-117	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	2e-13	GATA-type zinc finger protein with TIFY domain