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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sof003988 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
| Family |
YABBY |
| Protein Properties |
Length: 226aa MW: 25639.5 Da PI: 8.489 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Sof#S17433584 | PU_unref | Unigene | View CDS |
| PUT-157a-Saccharum_officinarum-100407 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 233.8 | 3.9e-72 | 5 | 164 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101
++ +e+vCyv+CnfCntilavsvPs s++++vtvrCGhCtsllsvnl+ q l++++h +e+ kv++ ++++n+ ++ +s++ ++ ++
Sof003988 5 QIAPVPEHVCYVHCNFCNTILAVSVPSHSMLNIVTVRCGHCTSLLSVNLRGLIQSLPVQNH-------YSQENFKVQNISFTENYPEYAPSSSKYRMPTM 97
567789******************************************************9.......568999*************9999999888776 PP
YABBY 102 ..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
+ + +++ + +r PekrqrvPsaynrfikeei+rikasnPdish+eafs+aaknWahfP+ihfgl
Sof003988 98 lsAKGDPDHMLH----VRAPEKRQRVPSAYNRFIKEEIRRIKASNPDISHKEAFSTAAKNWAHFPNIHFGL 164
433333444554....89***************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 226 aa
Download sequence Send
to blast |
MSAQQIAPVP EHVCYVHCNF CNTILAVSVP SHSMLNIVTV RCGHCTSLLS VNLRGLIQSL 60
PVQNHYSQEN FKVQNISFTE NYPEYAPSSS KYRMPTMLSA KGDPDHMLHV RAPEKRQRVP 120
SAYNRFIKEE IRRIKASNPD ISHKEAFSTA AKNWAHFPNI HFGLGPYESS NKLDEGHRCN 180
GPSPESXRSP LRPISTXALC XXYCKXXETR CILXHELVCE CGHIYR
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}. |
