PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Function |

Publication

Basic Information? help Back to Top

TF ID

Sof003825

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

C2H2

Protein Properties

Length: 232aa MW: 26073.9 Da PI: 8.829

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-373133725	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	87	111	1	23
EEETTTT..EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg..ksFsrksnLkrHirtH 23 y C+ Cg k+F +L++H+r + Sof003825 87 YACERCGgkKRFAVLADLRSHLRHC 111 89********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
XKGFRRDANL RMHMRAHGDR FKTLDALSRP GHGHGGQPPK PPAGSNVRFS CPFAGCNRNR 60 AHRRFRPLKS AVCARNHFRR SHCPKLYACE RCGGKKRFAV LADLRSHLRH CGEEAQWRCS 120 CGTTFSRKDK LFGHLALFEG HTPAITKPNK DVVTGPTEST IDAMEEVGFE EGNPDREEDE 180 EGGYDPEFFK EWMEELGGGA GGSNGLDQRQ PDNSNVARAN WMVWQDTSAY IK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002454046.1	1e-143	uncharacterized protein LOC8068935
Refseq	XP_021314916.1	1e-143	uncharacterized protein LOC8068935
Swissprot	Q943I6	1e-56	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A1Z5RND6	1e-141	A0A1Z5RND6_SORBI; Uncharacterized protein
STRING	Sb04g023670.1	1e-143	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	3e-57	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]