PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof003770 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | GRF | ||||||||||||
Protein Properties | Length: 234aa MW: 26056.8 Da PI: 10.637 | ||||||||||||
Description | GRF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 64.5 | 1.5e-20 | 146 | 183 | 1 | 38 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsr 38 d+epgrCrRtDGKkWRCs+++++++k+CErH++r+r+ Sof003770 146 DPEPGRCRRTDGKKWRCSKEAMADHKYCERHINRKRQX 183 79*********************************975 PP | |||||||
2 | QLQ | 58.4 | 2.1e-20 | 88 | 123 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+++L++Q+l+yKyL+a++P+P+ Ll i+k Sof003770 88 PFTPSQWMELEHQALIYKYLNAKAPIPSSLLISISK 123 9******************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.6E-11 | 87 | 123 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.1E-14 | 88 | 121 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.762 | 88 | 123 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 21.803 | 146 | 194 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.1E-17 | 147 | 185 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MELGVGDVMG LQQGIAITAP SPRGSGDLGL LKRAALTQAA AGPYPSPFLD EQKMLRFSKA 60 AHTLPSGLGL DFGGPSEQAF LLSRTKRPFT PSQWMELEHQ ALIYKYLNAK APIPSSLLIS 120 ISKSFRSSNR VSWRPLYQGY TNADSDPEPG RCRRTDGKKW RCSKEAMADH KYCERHINRK 180 RQXFKKACGK TTQKRPPRRC LLLLTHCHVL GHKGSLEKAK VNDSKPSTGH LVDR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.8682 | 0.0 | inflorescence| leaf| meristem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001106044.1 | 1e-113 | putative growth-regulating factor 13 | ||||
Swissprot | Q9FRG8 | 3e-93 | GRF9_ORYSJ; Growth-regulating factor 9 | ||||
TrEMBL | C4J2M4 | 1e-112 | C4J2M4_MAIZE; Growth-regulating factor 2 | ||||
STRING | GRMZM2G018414_P01 | 1e-113 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 7e-31 | growth-regulating factor 1 |
Publications ? help Back to Top | |||
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