PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003714
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family BBR-BPC
Protein Properties Length: 236aa    MW: 26043.2 Da    PI: 9.9328
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17395872PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-22064PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind43.21.4e-1332002152
  GAGA_bind   2 dddgsre.rnkgyyepaaslkenlglqlmssia.erdaki..........rernlalsekkaavaerd...........................maflq 62 
                dddgs   rn+g+y+     k nlglqlmss++ +rd+k           + ++ a ++                                    m+f +
  Sof003714   3 DDDGSLGiRNWGFYDTV---KGNLGLQLMSSVPpDRDTKSllpngaflqhHGHHNAPHQL-------HmqhsqhsrgpaggrasvgmpaesqpihMDFSR 92 
                45677779******987...************99******77777766653333333332.......0223334466999******************** PP

  GAGA_bind  63 rdkalaernkalverdnkllalllvensla.................salpvgvqvlsgtksi.dslqqlsepqledsave.lreeeklealpieeaaee 143
                ++++l++  ++  + ++k+++  ++  +                   +++p+g++++s+++++ +++q   e+ql++      ++e++l    i+   e+
  Sof003714  93 NEAWLHQ-LHHQRPPEQKVFHSRPIGPAGHvghpghgghpahgghivHHHPTGYGMISDAQHTlQMMQPPPESQLQEALSMqXKKERHLCCWRITLGLEV 191
                *******.7777888999**9999988777788999**********999*******99887651556668889999987663555555555566555555 PP

  GAGA_bind 144 akekkkkkk 152
                +++ + kkk
  Sof003714 192 TSKPPGKKK 200
                555444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.5E-111236IPR010409GAGA-binding transcriptional activator
PfamPF062176.6E-203207IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDDDDGSLGI RNWGFYDTVK GNLGLQLMSS VPPDRDTKSL LPNGAFLQHH GHHNAPHQLH  60
MQHSQHSRGP AGGRASVGMP AESQPIHMDF SRNEAWLHQL HHQRPPEQKV FHSRPIGPAG  120
HVGHPGHGGH PAHGGHIVHH HPTGYGMISD AQHTLQMMQP PPESQLQEAL SMQXKKERHL  180
CCWRITLGLE VTSKPPGKKK ASGPATKIGS LNPQRRKTLE GRCFPWREGP PMGLPP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.216560.0crown| inflorescence| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:12795701}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461880.11e-103protein Barley B recombinant
RefseqXP_021309578.11e-103protein Barley B recombinant
SwissprotQ8GUC32e-38BBR_HORVU; Protein Barley B recombinant
TrEMBLC5X4B51e-101C5X4B5_SORBI; Uncharacterized protein
STRINGSb02g009750.11e-102(Sorghum bicolor)
STRINGSb02g009782.11e-102(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.32e-08basic pentacysteine 2