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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sof003475 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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| Family |
AP2 |
| Protein Properties |
Length: 245aa MW: 26499.7 Da PI: 5.7965 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Sof#S17303045 | PU_unref | Unigene | View CDS |
| PUT-157a-Saccharum_officinarum-793133725 | PU_ref | plantGDB | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 23.2 | 1.7e-07 | 30 | 69 | 15 | 55 |
AP2 15 WvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55
W++ ++ g +k +lg+f t+eeAa+a++ + k++g
Sof003475 30 WAVA---GKD-GrvaGNKDLYLGTFSTEEEAAEAYDITAIKFRG 69
7766...444.335556***********************9997 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 245 aa
Download sequence Send
to blast |
XRTDGPGLTG STHACGCFYL QRCNQTSPAW AVAGKDGRVA GNKDLYLGTF STEEEAAEAY 60
DITAIKFRGL NAGTNFEIRR YNVESIMSSN IPMGSMSVGG RSNKALESPP SGSPDAIPVE 120
ASTAPLFAAL PVKYDQQQQD YLSMLTLQHH QQGNLQGLGF GLYSSGVNLD FANSHGTVSS 180
MTRCYVNGGT XFSHQQHQHH QQLQDQQQCE NETQQSSNSC FSLPFATPIA FNGSYESSMT 240
AGPLW
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| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
| Publications
? help Back to Top |
- Todd J,Post-Beittenmiller D,Jaworski JG
KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
Plant J., 1999. 17(2): p. 119-30
[PMID:10074711] - Molitor AM,Bu Z,Yu Y,Shen WH
Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
PLoS Genet., 2014. 10(1): p. e1004091
[PMID:24465219] - Feng J,Chen D,Berr A,Shen WH
ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
Plant Physiol., 2016. 172(3): p. 1746-1759
[PMID:27630184] - Santuari L, et al.
The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
Plant Cell, 2016. 28(12): p. 2937-2951
[PMID:27920338] - Du Y,Scheres B
PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
[PMID:29078398]
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