 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sof003339 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 250aa MW: 27931 Da PI: 8.8601 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Sof#S17268347 | PU_unref | Unigene | View CDS |
| PUT-157a-Saccharum_officinarum-18930 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.2 | 6.9e-19 | 69 | 121 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++ +eq+++Le++Fe +++++ ++++++A+ l L+ rqV vWFqNrRa++k
Sof003339 69 KRRLLQEQVRALERCFETDNKLDPDRKARIARDLALQPRQVAVWFQNRRARWK 121
456789**********************************************9 PP
|
| 2 | HD-ZIP_I/II | 124.5 | 4.9e-40 | 67 | 159 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrl +eqv++LE++Fe+++kL+p+rK+++ar+L lqprqvavWFqnrRAR+ktk lE+d++aL++++dal+++ ++L++++++L++e++e
Sof003339 67 EKKRRLLQEQVRALERCFETDNKLDPDRKARIARDLALQPRQVAVWFQNRRARWKTKTLERDFAALRARHDALRADCDALRHDKDALAAEIRE 159
69**************************************************************************************99986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 250 aa
Download sequence Send
to blast |
MKRQSKRPTA SRESPETGEK LAFAEEVALT ARKMETDEAE MDDVDEEDED ELAGRRAART 60
SSCGLGEKKR RLLQEQVRAL ERCFETDNKL DPDRKARIAR DLALQPRQVA VWFQNRRARW 120
KTKTLERDFA ALRARHDALR ADCDALRHDK DALAAEIREL RQKLLSKAPE AAVXLEATTG 180
NDTAEEERQT TGDAPPRGGL ARTAPSEQRT PSVGLPTTVE GRRPYSGARG SGASPGLPFG 240
FRLKPFLGNY
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
