PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Basic Information? help Back to Top

TF ID

Sof003084

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

MYB_related

Protein Properties

Length: 261aa MW: 28697.6 Da PI: 4.1967

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17368963	PU_ref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-118143	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.3	7.2e-13	48	89	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE +ll+++ + +Gg+ W+ Ia+++ ++t qc +++++ Sof003084 48 SWTDEETLLLLEGLEIFGGK-WAEIAEHVA-TKTKAQCMLHFLQ 89 7*****************.*****.********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57850	9.42E-6	2	25	No hit	No description
PROSITE profile	PS51293	21.688	44	95	IPR017884	SANT domain
SMART	SM00717	8.5E-13	45	93	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.84E-13	45	99	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-9	47	89	IPR009057	Homeodomain-like
Pfam	PF00249	4.3E-12	48	90	IPR001005	SANT/Myb domain
CDD	cd00167	5.25E-4	66	90	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
RKRYHCRTQA DFDLCCDCYN EGKFDPGMAK TDFILMDSAE VSGASGTSWT DEETLLLLEG 60 LEIFGGKWAE IAEHVATKTK AQCMLHFLQM QIEDRFHDGE DINQNIPVST EQATTEKVIA 120 DTSEKMEVED KVEGRDTADE KASENTEGSC EETKTEDANV VVNKDTQNSG GTDSGASPST 180 GEPKQSSDEQ PIVKENPQIY VLLVKNINVA IDILKSAFDG AGHTPEYERS FADARNPIMA 240 LAAYLTGLVE NDNTTTSSRI H

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.10389	0.0	crown\| inflorescence\| leaf\| meristem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466552.1	1e-147	SWI/SNF complex subunit SWI3D isoform X2
Refseq	XP_021320574.1	1e-147	SWI/SNF complex subunit SWI3D isoform X1
Refseq	XP_021320582.1	1e-149	SWI/SNF complex subunit SWI3D isoform X3
TrEMBL	C5WMX1	1e-146	C5WMX1_SORBI; Uncharacterized protein
STRING	Sb01g009800.1	1e-146	(Sorghum bicolor)