PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof002547
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NAC
Protein Properties Length: 291aa    MW: 32160.1 Da    PI: 11.2071
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17339978PU_refUnigeneView CDS
PUT-157a-Saccharum_officinarum-63030PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1081.2e-33111431128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevlsk... 95 
                lppGfrFhPtdeelv  yL++k+ +++l++  vi+ v d+  ++PwdLp    a+e e yfFs r+  ++ +g+r++r + sgyWka gk+k+v+ +   
  Sof002547  11 LPPGFRFHPTDEELVLLYLRRKALARPLPA-AVIPVVhDVAGLDPWDLPG---ASEGEGYFFSLRRAPATgRGSRRRR-AGSGYWKAMGKEKPVFLQcgg 105
                79****************************.8899998***********3...3566889999988766624666666.699**************9887 PP

        NAM  96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ lvg+k+ Lvf + +   +++t W++he rl
  Sof002547 106 gvxckRQLLVGVKTALVFXRSEPAPSSRTGWILHELRL 143
                777655556**********9999999*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-397149IPR003441NAC domain
PROSITE profilePS5100539.00511166IPR003441NAC domain
PfamPF023654.3E-2012143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MERPAQVPAQ LPPGFRFHPT DEELVLLYLR RKALARPLPA AVIPVVHDVA GLDPWDLPGA  60
SEGEGYFFSL RRAPATGRGS RRRRAGSGYW KAMGKEKPVF LQCGGGVXCK RQLLVGVKTA  120
LVFXRSEPAP SSRTGWILHE LRLAVPRGVP XQRRKNAAXV ALINRRENGS CAXSSLKTTG  180
PEAAGRTGTQ QQTLGHXAPL RNXKPGRVGG QRNRCCLRAE SSPSAVSRVX DSSDENTKSQ  240
RRMYKIAHCP PKEACKRILI FPSFGRGPNF LDHLDMRYLH DQVKDPPKMA Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-2621436140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.164180.0root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168145.17e-84uncharacterized protein LOC100381893 isoform 2
RefseqNP_001348480.14e-83uncharacterized protein LOC100381893 isoform 1
TrEMBLB6TW336e-86B6TW33_MAIZE; NAC domain-containing protein 18
STRINGGRMZM2G054277_P014e-82(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.26e-24NAC domain containing protein 41