PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Function |

Publication

Basic Information? help Back to Top

TF ID

Sof002473

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

C2H2

Protein Properties

Length: 296aa MW: 33182.4 Da PI: 6.706

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17411540	PU_unref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-19956	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.9	4.5e-07	161	182	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Sof002473 161 FCSICGKGFKRDANLRMHMRGH 182 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.63E-6	159	184	No hit	No description
SMART	SM00355	0.0023	160	182	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.092	160	187	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.2E-6	161	211	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	162	182	IPR007087	Zinc finger, C2H2
SMART	SM00355	71	209	242	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
XIRTMVDSGG QLPCHQGEIA QKQQVVNADL TCLIVQLIFT AGSLLPSLKN SSFLSHPAAG 60 HVDMANHVGP SSSLVPNAMN VSEENKEDMC TPEDYEELFK GWTDGAMEEG IEIDNVLFEE 120 QDMKDGDEGG DVGKDVENLP PGSYELLQLE KDEILAPHTH FCSICGKGFK RDANLRMHMR 180 GHGDEYKSPA ALAKPPRDAS AEHELVKRYS CPFVGCKRNK LHKNFQPLKT ILCVKNHYKR 240 SHCEKSYTCS RCHTKKFSVM AGPQEHEKHC GRDKWLCSWG TSFSRKDNFF AHLPLF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.14274	0.0	bud\| crown\| inflorescence

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004977257.1	0.0	zinc finger protein STAR3
Swissprot	Q943I6	1e-114	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A1E5VVV1	0.0	A0A1E5VVV1_9POAL; Zinc finger protein STOP1-like protein
STRING	Si010000m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-106	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]